CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  lig_1.pdb  ***

Normal Mode Analysis for ID 2610190714592175097

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.3042
mode 8 1.39 0.5604
mode 9 2.67 0.2515
mode 10 3.08 0.2028
mode 11 3.26 0.3085
mode 12 4.26 0.0593
mode 13 4.41 0.4766
mode 14 5.87 0.0947
mode 15 6.36 0.4234
mode 16 6.90 0.1733
mode 17 7.94 0.1853
mode 18 8.78 0.0994
mode 19 9.50 0.3046
mode 20 11.44 0.3961
mode 21 12.40 0.4714
mode 22 13.84 0.0235
mode 23 14.86 0.1234
mode 24 15.52 0.4087
mode 25 17.81 0.6640
mode 26 19.84 0.2939
mode 27 20.61 0.2573
mode 28 21.55 0.2899
mode 29 23.69 0.4277
mode 30 24.26 0.1207
mode 31 25.81 0.3950
mode 32 26.76 0.1949
mode 33 27.28 0.1694
mode 34 29.90 0.2417
mode 35 30.97 0.3152
mode 36 33.31 0.2584
mode 37 34.43 0.3291
mode 38 38.35 0.3864
mode 39 39.18 0.2421
mode 40 40.10 0.3065
mode 41 40.67 0.0283
mode 42 43.66 0.3458
mode 43 44.67 0.5156
mode 44 48.51 0.3513
mode 45 49.22 0.2620
mode 46 50.31 0.2495
mode 47 51.17 0.0718
mode 48 52.74 0.2054
mode 49 55.15 0.2345
mode 50 57.50 0.4458
mode 51 59.36 0.3343
mode 52 61.03 0.1489
mode 53 61.82 0.2155
mode 54 65.25 0.3346
mode 55 66.72 0.2147
mode 56 67.78 0.1246
mode 57 70.09 0.1888
mode 58 71.39 0.4661
mode 59 73.47 0.4442
mode 60 74.28 0.3833
mode 61 75.39 0.1605
mode 62 75.86 0.2687
mode 63 77.89 0.1018
mode 64 79.15 0.5570
mode 65 80.86 0.4934
mode 66 83.83 0.1584
mode 67 85.21 0.2008
mode 68 86.68 0.2874
mode 69 87.29 0.2890
mode 70 88.88 0.4070
mode 71 91.15 0.3932
mode 72 92.69 0.4246
mode 73 93.94 0.4009
mode 74 94.76 0.4366
mode 75 96.21 0.1906
mode 76 96.62 0.2158
mode 77 97.89 0.1907
mode 78 99.43 0.2469
mode 79 100.33 0.2921
mode 80 101.47 0.3331
mode 81 103.03 0.1119
mode 82 103.51 0.2450
mode 83 104.99 0.1797
mode 84 107.02 0.1301
mode 85 108.41 0.2038
mode 86 110.10 0.2433
mode 87 110.37 0.2205
mode 88 112.38 0.0952
mode 89 112.87 0.2583
mode 90 113.27 0.2565
mode 91 114.93 0.1332
mode 92 115.49 0.2347
mode 93 116.87 0.1906
mode 94 118.77 0.3187
mode 95 119.52 0.3895
mode 96 120.98 0.0474
mode 97 121.31 0.0972
mode 98 122.04 0.1094
mode 99 124.11 0.3478
mode 100 125.11 0.3750
mode 101 126.26 0.3992
mode 102 126.77 0.3045
mode 103 128.69 0.3663
mode 104 130.42 0.2405
mode 105 130.73 0.2553
mode 106 131.18 0.1971

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.